diff --git a/esphome/components/zigbee/time/zigbee_time_zephyr.cpp b/esphome/components/zigbee/time/zigbee_time_zephyr.cpp
index 92d238629a..3f14d0a62d 100644
--- a/esphome/components/zigbee/time/zigbee_time_zephyr.cpp
+++ b/esphome/components/zigbee/time/zigbee_time_zephyr.cpp
@@ -1,6 +1,7 @@
 #include "zigbee_time_zephyr.h"
 #if defined(USE_ZIGBEE) && defined(USE_NRF52) && defined(USE_TIME)
 #include "esphome/core/log.h"
+#include "esphome/core/application.h"
 
 namespace esphome::zigbee {
 
@@ -47,6 +48,7 @@ void ZigbeeTime::set_epoch_time(uint32_t epoch) {
     this->synchronize_epoch_(epoch);
     this->has_time_ = true;
   });
+  App.wake_loop_threadsafe();
 }
 
 void ZigbeeTime::zcl_device_cb_(zb_bufid_t bufid) {
diff --git a/esphome/components/zigbee/zigbee_esp32.cpp b/esphome/components/zigbee/zigbee_esp32.cpp
index cd094306f4..4f9c70da75 100644
--- a/esphome/components/zigbee/zigbee_esp32.cpp
+++ b/esphome/components/zigbee/zigbee_esp32.cpp
@@ -49,7 +49,8 @@ void ZigbeeComponent::factory_reset() {
 
 void ZigbeeComponent::esp_zigbee_alarm_bdb_commissioning(ezb_bdb_comm_mode_mask_t mode) {
   if (!esp_zigbee_lock_acquire(10 / portTICK_PERIOD_MS)) {
-    global_zigbee->set_timeout("zb_init", 10, [mode]() { ZigbeeComponent::esp_zigbee_alarm_bdb_commissioning(mode); });
+    global_zigbee->set_timeout("zb_init", 100, [mode]() { ZigbeeComponent::esp_zigbee_alarm_bdb_commissioning(mode); });
+    App.wake_loop_threadsafe();
     return;
   }
   if (ezb_bdb_start_top_level_commissioning(mode) != EZB_ERR_NONE) {
@@ -88,6 +89,7 @@ bool ZigbeeComponent::app_signal_handler(const ezb_app_signal_t *app_signal) {
         global_zigbee->set_timeout("zb_init", 1000, []() {
           ZigbeeComponent::esp_zigbee_alarm_bdb_commissioning(EZB_BDB_MODE_INITIALIZATION);
         });
+        App.wake_loop_threadsafe();
       }
     } break;
     case EZB_BDB_SIGNAL_STEERING: {
@@ -113,6 +115,7 @@ bool ZigbeeComponent::app_signal_handler(const ezb_app_signal_t *app_signal) {
             ZigbeeComponent::esp_zigbee_alarm_bdb_commissioning(EZB_BDB_MODE_NETWORK_STEERING);
           });
         }
+        App.wake_loop_threadsafe();
       }
     } break;
     case EZB_ZDO_SIGNAL_LEAVE: {
diff --git a/esphome/components/zigbee/zigbee_zephyr.cpp b/esphome/components/zigbee/zigbee_zephyr.cpp
index b8bb0a2036..286c83b8f5 100644
--- a/esphome/components/zigbee/zigbee_zephyr.cpp
+++ b/esphome/components/zigbee/zigbee_zephyr.cpp
@@ -1,10 +1,10 @@
 #include "zigbee_zephyr.h"
 #if defined(USE_ZIGBEE) && defined(USE_NRF52)
 #include "esphome/core/log.h"
+#include "esphome/core/application.h"
 #include <zephyr/settings/settings.h>
 #include <zephyr/storage/flash_map.h>
 #include "esphome/core/hal.h"
-#include "esphome/core/wake.h"
 
 extern "C" {
 #include <zboss_api.h>
@@ -120,7 +120,7 @@ void ZigbeeComponent::zcl_device_cb(zb_bufid_t bufid) {
   /* Set default response value. */
   p_device_cb_param->status = RET_OK;
 
-  esphome::wake_loop_threadsafe();
+  App.wake_loop_threadsafe();
 
   // endpoints are enumerated from 1
   if (global_zigbee->callbacks_.size() >= endpoint) {
@@ -138,6 +138,7 @@ void ZigbeeComponent::on_join_(bool factory_new) {
     ESP_LOGD(TAG, "Joined the network");
     this->join_cb_.call(factory_new);
   });
+  App.wake_loop_threadsafe();
 }
 
 void ZigbeeComponent::on_start_() {
@@ -145,6 +146,7 @@ void ZigbeeComponent::on_start_() {
     ESP_LOGD(TAG, "Started zigbee stack");
     this->start_cb_.call();
   });
+  App.wake_loop_threadsafe();
 }
 
 #ifdef USE_ZIGBEE_WIPE_ON_BOOT